af | Allele frequencies |
af_snp | Allele frequencies for SNP |
center | Matrix centering |
centerscale | Matrix centering and scaling |
hgdp_subset | HGDP subset |
lfa | Logistic factor analysis |
model.gof | LFA model goodness of fit |
pca_af | PCA Allele frequencies |
read.bed | File input: .bed |
read.tped.recode | Read .tped |
sHWE | Hardy-Weinberg Equilibrium in structure populations |
trunc.svd | Truncated singular value decomposition |
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