SelectVar-print: 'print.SV' a SelectVar object Generic Print/Summary method...
In kimod: A k-tables approach to integrate multiple Omics-Data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
print.SV a SelectVar object
Generic Print/Summary method for SelectVar class output visualization.
Usage
1
2
## S4 method for signature 'SelectVar'
print(x)
Arguments
x
SelectVar class object.
Value
according to the call
print
the console output the text with increasing detail of
SelectVar object.
Author(s)
M L Zingaretti, J A Demey-Zambrano, J L Vicente-Villardon, J R Demey
See Also
Examples
1
2
3
4
5
6
7
8
9
10
{
data(NCI60Selec)
fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
A<-SelectVar(fit,Crit="p-val(Bonf)",perc=0.95)
print(A)
summary(A)
}
Example output
The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Coord.Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC
XCoord 610.9698 -143.2330 -221.7316 -8.472996 1041.0561 293.2782 1054.9391
YCoord -322.5550 387.8573 -406.1842 460.770254 693.6809 -948.4085 -505.7297
PRKD1 S100A1 PDLIM2 CA12 FAM57A ETV3 LEPREL1
XCoord 936.5096 249.514 552.61632 748.5028 421.74003 39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131 C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462 250.009 -261.4446 620.5819
YCoord 230.525 235.9062 101.3005 68.49096 -1719.124 -106.5732 -488.4033
FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A
XCoord -1377.1020 44.55697 -220.4161 909.2101 -92.10326 570.3918 -233.4188
YCoord -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
F3 BACE1 SPEG FERMT1 C19orf39 ARAP3
XCoord 695.0110 921.7503 918.9075 -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797 30.81431 95.9009
KRT8P23 PTPN21 LHFP ATP1A3 C10orf90 SC65 WWC2
XCoord 90.13505 776.14018 1609.7917 8.413108 736.2727 561.96299 861.4079
YCoord -1326.43876 -80.41194 305.9202 464.238436 1906.6591 -38.52365 -220.7640
OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
XCoord 5.682858 534.5561 435.4019 1305.826 1110.4731 285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125 328.910 721.3418 2733.5067 811.6252
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB
XCoord 469.3992 -1287.3549 281.2331 145.188 788.3745 -869.3529342 338.7627
YCoord -159.7674 139.9926 1678.1276 1467.845 -89.8902 0.6476851 2279.1900
SC65 LHFP C6orf218 PVR PTPN21 TOR2A C1orf131
XCoord 518.87401 1218.0860 180.5202 591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428 296.1415 1769.2114 -293.9604 -70.04085 -108.2214 -87.55788
ACP5 PLP1 BACE1 FERMT1 S100A1 HSPBAP1 SOX10
XCoord 98.71329 237.7728 361.9432 -300.0214 156.052 -17.58142 194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7 -0.92 -0.92 -0.12 0.82 1.99 3.07 3.11 -4.77 -4.84 -2.03
BR.MDA_MB_231 1.28 -0.73 0.25 -0.79 2.94 2.80 1.08 -5.65 -5.60 -1.42
BR.HS578T 1.46 -0.95 0.97 -0.46 2.73 3.12 3.55 0.05 -5.87 1.87
BR.BT_549 1.69 -1.02 1.30 -0.26 -0.80 2.56 2.59 -5.57 -5.50 0.50
BR.T47D 0.24 -1.87 0.96 0.86 2.75 3.16 3.51 -5.88 -1.38 -0.94
CNS.SF_268 1.52 -1.16 -0.70 -1.07 2.09 -0.09 2.09 -0.01 -5.96 0.27
CA12 FAM57A ETV3 LEPREL1 GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7 3.85 0.23 0.24 -3.84 -6.81 0.24 -0.68 0.83 -1.08 -0.21
BR.MDA_MB_231 -0.40 0.89 -0.73 3.21 -6.25 -0.59 0.26 1.41 3.09 -2.28
BR.HS578T 2.63 0.03 -0.64 4.59 -0.10 -0.30 0.91 2.16 -3.88 -0.36
BR.BT_549 -0.94 0.52 -0.14 4.69 2.98 -0.74 0.91 2.57 -5.43 -0.31
BR.T47D 5.37 -0.72 0.28 -3.10 1.12 0.52 0.30 2.31 0.61 -0.15
CNS.SF_268 -4.33 2.01 -0.31 1.63 -0.66 -0.05 0.66 1.69 -2.82 -1.86
C3orf59 FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A F3 BACE1
BR.MCF7 -0.89 0.83 -3.10 -0.81 3.15 0.11 -2.25 1.36 -4.28 1.70
BR.MDA_MB_231 -2.45 -5.80 -3.54 -2.37 2.09 -0.83 1.44 0.84 3.35 2.98
BR.HS578T -0.83 -6.57 -3.48 -0.76 -0.20 -0.42 -1.69 -0.47 0.54 3.33
BR.BT_549 0.17 -6.99 -3.31 0.97 0.66 -0.74 1.97 -0.55 -3.85 3.32
BR.T47D -0.20 -0.20 -3.15 -2.54 4.98 -0.03 -1.03 1.54 -3.64 2.90
CNS.SF_268 -0.29 -6.75 -3.04 -2.99 0.97 -0.16 -0.94 -0.65 1.01 3.01
SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21 LHFP ATP1A3 C10orf90
BR.MCF7 1.68 -0.62 0.84 -3.50 5.24 -2.93 -5.24 0.47 -7.45
BR.MDA_MB_231 1.37 0.35 -0.89 1.38 0.72 -0.22 1.29 1.16 -7.51
BR.HS578T 4.25 0.47 -0.99 0.18 -1.96 0.11 1.99 -0.15 -4.45
BR.BT_549 3.52 -0.20 -0.37 -4.80 -2.55 -0.87 3.01 0.28 -4.05
BR.T47D 0.53 0.48 1.29 -3.54 4.52 0.64 0.77 0.14 -7.74
CNS.SF_268 1.59 -0.97 -1.30 -0.11 -1.41 0.03 2.69 0.36 -7.25
SC65 WWC2 OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
BR.MCF7 1.03 -1.48 1.04 -0.37 -0.71 2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83 1.27 -2.93 1.84 1.58 -5.85 -0.68 -7.51 1.18
BR.HS578T 1.39 0.77 -3.88 1.46 0.85 3.33 0.96 -7.30 -1.05
BR.BT_549 0.90 0.67 -0.43 0.49 1.06 2.81 -1.07 -7.37 0.89
BR.T47D 1.33 0.63 0.28 -1.41 -1.38 0.41 -5.41 -7.74 0.93
CNS.SF_268 -0.12 1.52 0.20 1.58 1.43 1.84 -0.86 -7.25 2.18
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB SC65 LHFP
BR.MCF7 -1.33 -4.13 2.92 3.01 2.36 2.77 2.27 7.068981 2.732669
BR.MDA_MB_231 0.87 -2.11 2.31 2.58 4.89 2.26 2.05 4.881329 7.735258
BR.HS578T 1.41 -3.62 2.27 2.57 7.15 2.26 6.08 8.096910 9.634932
BR.BT_549 0.75 -3.18 2.34 2.58 7.10 2.31 2.08 7.085175 9.259418
BR.T47D -1.71 -3.89 2.29 4.75 2.21 2.27 2.10 7.649733 5.581497
CNS.SF_268 0.49 -4.21 2.24 2.53 2.40 2.28 2.12 6.435531 9.566662
C6orf218 PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7 2.286398 6.602582 3.19 5.44 5.88 1.98 2.60 3.54 2.83
BR.MDA_MB_231 2.286398 9.494251 5.41 5.21 4.67 1.77 2.36 5.85 5.23
BR.HS578T 2.286398 8.633170 5.04 3.89 6.16 1.72 2.32 6.48 5.34
BR.BT_549 2.286398 9.534073 4.29 3.79 4.67 1.84 2.49 5.86 3.49
BR.T47D 2.286398 7.052372 5.01 5.35 6.23 1.76 2.39 5.56 4.28
CNS.SF_268 2.286398 8.643488 5.07 3.91 4.18 1.77 2.39 5.96 3.32
S100A1 HSPBAP1 SOX10
BR.MCF7 2.93 4.11 2.69
BR.MDA_MB_231 2.72 4.12 2.44
BR.HS578T 2.65 4.12 2.40
BR.BT_549 2.73 4.29 2.61
BR.T47D 5.30 4.23 2.47
CNS.SF_268 2.70 4.03 2.46
List Select Var:
[1] "LHFP" "WWC2" "LEPREL1" "PVR" "VAMP3" "LOC344978"
Coord.Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC
XCoord 610.9698 -143.2330 -221.7316 -8.472996 1041.0561 293.2782 1054.9391
YCoord -322.5550 387.8573 -406.1842 460.770254 693.6809 -948.4085 -505.7297
PRKD1 S100A1 PDLIM2 CA12 FAM57A ETV3 LEPREL1
XCoord 936.5096 249.514 552.61632 748.5028 421.74003 39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131 C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462 250.009 -261.4446 620.5819
YCoord 230.525 235.9062 101.3005 68.49096 -1719.124 -106.5732 -488.4033
FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A
XCoord -1377.1020 44.55697 -220.4161 909.2101 -92.10326 570.3918 -233.4188
YCoord -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
F3 BACE1 SPEG FERMT1 C19orf39 ARAP3
XCoord 695.0110 921.7503 918.9075 -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797 30.81431 95.9009
KRT8P23 PTPN21 LHFP ATP1A3 C10orf90 SC65 WWC2
XCoord 90.13505 776.14018 1609.7917 8.413108 736.2727 561.96299 861.4079
YCoord -1326.43876 -80.41194 305.9202 464.238436 1906.6591 -38.52365 -220.7640
OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
XCoord 5.682858 534.5561 435.4019 1305.826 1110.4731 285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125 328.910 721.3418 2733.5067 811.6252
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB
XCoord 469.3992 -1287.3549 281.2331 145.188 788.3745 -869.3529342 338.7627
YCoord -159.7674 139.9926 1678.1276 1467.845 -89.8902 0.6476851 2279.1900
SC65 LHFP C6orf218 PVR PTPN21 TOR2A C1orf131
XCoord 518.87401 1218.0860 180.5202 591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428 296.1415 1769.2114 -293.9604 -70.04085 -108.2214 -87.55788
ACP5 PLP1 BACE1 FERMT1 S100A1 HSPBAP1 SOX10
XCoord 98.71329 237.7728 361.9432 -300.0214 156.052 -17.58142 194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7 -0.92 -0.92 -0.12 0.82 1.99 3.07 3.11 -4.77 -4.84 -2.03
BR.MDA_MB_231 1.28 -0.73 0.25 -0.79 2.94 2.80 1.08 -5.65 -5.60 -1.42
BR.HS578T 1.46 -0.95 0.97 -0.46 2.73 3.12 3.55 0.05 -5.87 1.87
BR.BT_549 1.69 -1.02 1.30 -0.26 -0.80 2.56 2.59 -5.57 -5.50 0.50
BR.T47D 0.24 -1.87 0.96 0.86 2.75 3.16 3.51 -5.88 -1.38 -0.94
CNS.SF_268 1.52 -1.16 -0.70 -1.07 2.09 -0.09 2.09 -0.01 -5.96 0.27
CA12 FAM57A ETV3 LEPREL1 GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7 3.85 0.23 0.24 -3.84 -6.81 0.24 -0.68 0.83 -1.08 -0.21
BR.MDA_MB_231 -0.40 0.89 -0.73 3.21 -6.25 -0.59 0.26 1.41 3.09 -2.28
BR.HS578T 2.63 0.03 -0.64 4.59 -0.10 -0.30 0.91 2.16 -3.88 -0.36
BR.BT_549 -0.94 0.52 -0.14 4.69 2.98 -0.74 0.91 2.57 -5.43 -0.31
BR.T47D 5.37 -0.72 0.28 -3.10 1.12 0.52 0.30 2.31 0.61 -0.15
CNS.SF_268 -4.33 2.01 -0.31 1.63 -0.66 -0.05 0.66 1.69 -2.82 -1.86
C3orf59 FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A F3 BACE1
BR.MCF7 -0.89 0.83 -3.10 -0.81 3.15 0.11 -2.25 1.36 -4.28 1.70
BR.MDA_MB_231 -2.45 -5.80 -3.54 -2.37 2.09 -0.83 1.44 0.84 3.35 2.98
BR.HS578T -0.83 -6.57 -3.48 -0.76 -0.20 -0.42 -1.69 -0.47 0.54 3.33
BR.BT_549 0.17 -6.99 -3.31 0.97 0.66 -0.74 1.97 -0.55 -3.85 3.32
BR.T47D -0.20 -0.20 -3.15 -2.54 4.98 -0.03 -1.03 1.54 -3.64 2.90
CNS.SF_268 -0.29 -6.75 -3.04 -2.99 0.97 -0.16 -0.94 -0.65 1.01 3.01
SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21 LHFP ATP1A3 C10orf90
BR.MCF7 1.68 -0.62 0.84 -3.50 5.24 -2.93 -5.24 0.47 -7.45
BR.MDA_MB_231 1.37 0.35 -0.89 1.38 0.72 -0.22 1.29 1.16 -7.51
BR.HS578T 4.25 0.47 -0.99 0.18 -1.96 0.11 1.99 -0.15 -4.45
BR.BT_549 3.52 -0.20 -0.37 -4.80 -2.55 -0.87 3.01 0.28 -4.05
BR.T47D 0.53 0.48 1.29 -3.54 4.52 0.64 0.77 0.14 -7.74
CNS.SF_268 1.59 -0.97 -1.30 -0.11 -1.41 0.03 2.69 0.36 -7.25
SC65 WWC2 OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
BR.MCF7 1.03 -1.48 1.04 -0.37 -0.71 2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83 1.27 -2.93 1.84 1.58 -5.85 -0.68 -7.51 1.18
BR.HS578T 1.39 0.77 -3.88 1.46 0.85 3.33 0.96 -7.30 -1.05
BR.BT_549 0.90 0.67 -0.43 0.49 1.06 2.81 -1.07 -7.37 0.89
BR.T47D 1.33 0.63 0.28 -1.41 -1.38 0.41 -5.41 -7.74 0.93
CNS.SF_268 -0.12 1.52 0.20 1.58 1.43 1.84 -0.86 -7.25 2.18
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB SC65 LHFP
BR.MCF7 -1.33 -4.13 2.92 3.01 2.36 2.77 2.27 7.068981 2.732669
BR.MDA_MB_231 0.87 -2.11 2.31 2.58 4.89 2.26 2.05 4.881329 7.735258
BR.HS578T 1.41 -3.62 2.27 2.57 7.15 2.26 6.08 8.096910 9.634932
BR.BT_549 0.75 -3.18 2.34 2.58 7.10 2.31 2.08 7.085175 9.259418
BR.T47D -1.71 -3.89 2.29 4.75 2.21 2.27 2.10 7.649733 5.581497
CNS.SF_268 0.49 -4.21 2.24 2.53 2.40 2.28 2.12 6.435531 9.566662
C6orf218 PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7 2.286398 6.602582 3.19 5.44 5.88 1.98 2.60 3.54 2.83
BR.MDA_MB_231 2.286398 9.494251 5.41 5.21 4.67 1.77 2.36 5.85 5.23
BR.HS578T 2.286398 8.633170 5.04 3.89 6.16 1.72 2.32 6.48 5.34
BR.BT_549 2.286398 9.534073 4.29 3.79 4.67 1.84 2.49 5.86 3.49
BR.T47D 2.286398 7.052372 5.01 5.35 6.23 1.76 2.39 5.56 4.28
CNS.SF_268 2.286398 8.643488 5.07 3.91 4.18 1.77 2.39 5.96 3.32
S100A1 HSPBAP1 SOX10
BR.MCF7 2.93 4.11 2.69
BR.MDA_MB_231 2.72 4.12 2.44
BR.HS578T 2.65 4.12 2.40
BR.BT_549 2.73 4.29 2.61
BR.T47D 5.30 4.23 2.47
CNS.SF_268 2.70 4.03 2.46
List Select Var:
[1] "LHFP" "WWC2" "LEPREL1" "PVR" "VAMP3" "LOC344978"
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Description Usage Arguments Value Author(s) See Also Examples
Description
print.SV a SelectVar object
Generic Print/Summary method for SelectVar class output visualization.
Usage
1 2 | ## S4 method for signature 'SelectVar'
print(x)
|
Arguments
x |
SelectVar class object. |
Value
according to the call
print |
the console output the text with increasing detail of SelectVar object. |
Author(s)
M L Zingaretti, J A Demey-Zambrano, J L Vicente-Villardon, J R Demey
See Also
Examples
1 2 3 4 5 6 7 8 9 10 | {
data(NCI60Selec)
fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
A<-SelectVar(fit,Crit="p-val(Bonf)",perc=0.95)
print(A)
summary(A)
}
|
Example output
The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Coord.Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC
XCoord 610.9698 -143.2330 -221.7316 -8.472996 1041.0561 293.2782 1054.9391
YCoord -322.5550 387.8573 -406.1842 460.770254 693.6809 -948.4085 -505.7297
PRKD1 S100A1 PDLIM2 CA12 FAM57A ETV3 LEPREL1
XCoord 936.5096 249.514 552.61632 748.5028 421.74003 39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131 C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462 250.009 -261.4446 620.5819
YCoord 230.525 235.9062 101.3005 68.49096 -1719.124 -106.5732 -488.4033
FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A
XCoord -1377.1020 44.55697 -220.4161 909.2101 -92.10326 570.3918 -233.4188
YCoord -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
F3 BACE1 SPEG FERMT1 C19orf39 ARAP3
XCoord 695.0110 921.7503 918.9075 -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797 30.81431 95.9009
KRT8P23 PTPN21 LHFP ATP1A3 C10orf90 SC65 WWC2
XCoord 90.13505 776.14018 1609.7917 8.413108 736.2727 561.96299 861.4079
YCoord -1326.43876 -80.41194 305.9202 464.238436 1906.6591 -38.52365 -220.7640
OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
XCoord 5.682858 534.5561 435.4019 1305.826 1110.4731 285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125 328.910 721.3418 2733.5067 811.6252
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB
XCoord 469.3992 -1287.3549 281.2331 145.188 788.3745 -869.3529342 338.7627
YCoord -159.7674 139.9926 1678.1276 1467.845 -89.8902 0.6476851 2279.1900
SC65 LHFP C6orf218 PVR PTPN21 TOR2A C1orf131
XCoord 518.87401 1218.0860 180.5202 591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428 296.1415 1769.2114 -293.9604 -70.04085 -108.2214 -87.55788
ACP5 PLP1 BACE1 FERMT1 S100A1 HSPBAP1 SOX10
XCoord 98.71329 237.7728 361.9432 -300.0214 156.052 -17.58142 194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7 -0.92 -0.92 -0.12 0.82 1.99 3.07 3.11 -4.77 -4.84 -2.03
BR.MDA_MB_231 1.28 -0.73 0.25 -0.79 2.94 2.80 1.08 -5.65 -5.60 -1.42
BR.HS578T 1.46 -0.95 0.97 -0.46 2.73 3.12 3.55 0.05 -5.87 1.87
BR.BT_549 1.69 -1.02 1.30 -0.26 -0.80 2.56 2.59 -5.57 -5.50 0.50
BR.T47D 0.24 -1.87 0.96 0.86 2.75 3.16 3.51 -5.88 -1.38 -0.94
CNS.SF_268 1.52 -1.16 -0.70 -1.07 2.09 -0.09 2.09 -0.01 -5.96 0.27
CA12 FAM57A ETV3 LEPREL1 GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7 3.85 0.23 0.24 -3.84 -6.81 0.24 -0.68 0.83 -1.08 -0.21
BR.MDA_MB_231 -0.40 0.89 -0.73 3.21 -6.25 -0.59 0.26 1.41 3.09 -2.28
BR.HS578T 2.63 0.03 -0.64 4.59 -0.10 -0.30 0.91 2.16 -3.88 -0.36
BR.BT_549 -0.94 0.52 -0.14 4.69 2.98 -0.74 0.91 2.57 -5.43 -0.31
BR.T47D 5.37 -0.72 0.28 -3.10 1.12 0.52 0.30 2.31 0.61 -0.15
CNS.SF_268 -4.33 2.01 -0.31 1.63 -0.66 -0.05 0.66 1.69 -2.82 -1.86
C3orf59 FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A F3 BACE1
BR.MCF7 -0.89 0.83 -3.10 -0.81 3.15 0.11 -2.25 1.36 -4.28 1.70
BR.MDA_MB_231 -2.45 -5.80 -3.54 -2.37 2.09 -0.83 1.44 0.84 3.35 2.98
BR.HS578T -0.83 -6.57 -3.48 -0.76 -0.20 -0.42 -1.69 -0.47 0.54 3.33
BR.BT_549 0.17 -6.99 -3.31 0.97 0.66 -0.74 1.97 -0.55 -3.85 3.32
BR.T47D -0.20 -0.20 -3.15 -2.54 4.98 -0.03 -1.03 1.54 -3.64 2.90
CNS.SF_268 -0.29 -6.75 -3.04 -2.99 0.97 -0.16 -0.94 -0.65 1.01 3.01
SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21 LHFP ATP1A3 C10orf90
BR.MCF7 1.68 -0.62 0.84 -3.50 5.24 -2.93 -5.24 0.47 -7.45
BR.MDA_MB_231 1.37 0.35 -0.89 1.38 0.72 -0.22 1.29 1.16 -7.51
BR.HS578T 4.25 0.47 -0.99 0.18 -1.96 0.11 1.99 -0.15 -4.45
BR.BT_549 3.52 -0.20 -0.37 -4.80 -2.55 -0.87 3.01 0.28 -4.05
BR.T47D 0.53 0.48 1.29 -3.54 4.52 0.64 0.77 0.14 -7.74
CNS.SF_268 1.59 -0.97 -1.30 -0.11 -1.41 0.03 2.69 0.36 -7.25
SC65 WWC2 OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
BR.MCF7 1.03 -1.48 1.04 -0.37 -0.71 2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83 1.27 -2.93 1.84 1.58 -5.85 -0.68 -7.51 1.18
BR.HS578T 1.39 0.77 -3.88 1.46 0.85 3.33 0.96 -7.30 -1.05
BR.BT_549 0.90 0.67 -0.43 0.49 1.06 2.81 -1.07 -7.37 0.89
BR.T47D 1.33 0.63 0.28 -1.41 -1.38 0.41 -5.41 -7.74 0.93
CNS.SF_268 -0.12 1.52 0.20 1.58 1.43 1.84 -0.86 -7.25 2.18
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB SC65 LHFP
BR.MCF7 -1.33 -4.13 2.92 3.01 2.36 2.77 2.27 7.068981 2.732669
BR.MDA_MB_231 0.87 -2.11 2.31 2.58 4.89 2.26 2.05 4.881329 7.735258
BR.HS578T 1.41 -3.62 2.27 2.57 7.15 2.26 6.08 8.096910 9.634932
BR.BT_549 0.75 -3.18 2.34 2.58 7.10 2.31 2.08 7.085175 9.259418
BR.T47D -1.71 -3.89 2.29 4.75 2.21 2.27 2.10 7.649733 5.581497
CNS.SF_268 0.49 -4.21 2.24 2.53 2.40 2.28 2.12 6.435531 9.566662
C6orf218 PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7 2.286398 6.602582 3.19 5.44 5.88 1.98 2.60 3.54 2.83
BR.MDA_MB_231 2.286398 9.494251 5.41 5.21 4.67 1.77 2.36 5.85 5.23
BR.HS578T 2.286398 8.633170 5.04 3.89 6.16 1.72 2.32 6.48 5.34
BR.BT_549 2.286398 9.534073 4.29 3.79 4.67 1.84 2.49 5.86 3.49
BR.T47D 2.286398 7.052372 5.01 5.35 6.23 1.76 2.39 5.56 4.28
CNS.SF_268 2.286398 8.643488 5.07 3.91 4.18 1.77 2.39 5.96 3.32
S100A1 HSPBAP1 SOX10
BR.MCF7 2.93 4.11 2.69
BR.MDA_MB_231 2.72 4.12 2.44
BR.HS578T 2.65 4.12 2.40
BR.BT_549 2.73 4.29 2.61
BR.T47D 5.30 4.23 2.47
CNS.SF_268 2.70 4.03 2.46
List Select Var:
[1] "LHFP" "WWC2" "LEPREL1" "PVR" "VAMP3" "LOC344978"
Coord.Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC
XCoord 610.9698 -143.2330 -221.7316 -8.472996 1041.0561 293.2782 1054.9391
YCoord -322.5550 387.8573 -406.1842 460.770254 693.6809 -948.4085 -505.7297
PRKD1 S100A1 PDLIM2 CA12 FAM57A ETV3 LEPREL1
XCoord 936.5096 249.514 552.61632 748.5028 421.74003 39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131 C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462 250.009 -261.4446 620.5819
YCoord 230.525 235.9062 101.3005 68.49096 -1719.124 -106.5732 -488.4033
FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A
XCoord -1377.1020 44.55697 -220.4161 909.2101 -92.10326 570.3918 -233.4188
YCoord -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
F3 BACE1 SPEG FERMT1 C19orf39 ARAP3
XCoord 695.0110 921.7503 918.9075 -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797 30.81431 95.9009
KRT8P23 PTPN21 LHFP ATP1A3 C10orf90 SC65 WWC2
XCoord 90.13505 776.14018 1609.7917 8.413108 736.2727 561.96299 861.4079
YCoord -1326.43876 -80.41194 305.9202 464.238436 1906.6591 -38.52365 -220.7640
OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
XCoord 5.682858 534.5561 435.4019 1305.826 1110.4731 285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125 328.910 721.3418 2733.5067 811.6252
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB
XCoord 469.3992 -1287.3549 281.2331 145.188 788.3745 -869.3529342 338.7627
YCoord -159.7674 139.9926 1678.1276 1467.845 -89.8902 0.6476851 2279.1900
SC65 LHFP C6orf218 PVR PTPN21 TOR2A C1orf131
XCoord 518.87401 1218.0860 180.5202 591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428 296.1415 1769.2114 -293.9604 -70.04085 -108.2214 -87.55788
ACP5 PLP1 BACE1 FERMT1 S100A1 HSPBAP1 SOX10
XCoord 98.71329 237.7728 361.9432 -300.0214 156.052 -17.58142 194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7 -0.92 -0.92 -0.12 0.82 1.99 3.07 3.11 -4.77 -4.84 -2.03
BR.MDA_MB_231 1.28 -0.73 0.25 -0.79 2.94 2.80 1.08 -5.65 -5.60 -1.42
BR.HS578T 1.46 -0.95 0.97 -0.46 2.73 3.12 3.55 0.05 -5.87 1.87
BR.BT_549 1.69 -1.02 1.30 -0.26 -0.80 2.56 2.59 -5.57 -5.50 0.50
BR.T47D 0.24 -1.87 0.96 0.86 2.75 3.16 3.51 -5.88 -1.38 -0.94
CNS.SF_268 1.52 -1.16 -0.70 -1.07 2.09 -0.09 2.09 -0.01 -5.96 0.27
CA12 FAM57A ETV3 LEPREL1 GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7 3.85 0.23 0.24 -3.84 -6.81 0.24 -0.68 0.83 -1.08 -0.21
BR.MDA_MB_231 -0.40 0.89 -0.73 3.21 -6.25 -0.59 0.26 1.41 3.09 -2.28
BR.HS578T 2.63 0.03 -0.64 4.59 -0.10 -0.30 0.91 2.16 -3.88 -0.36
BR.BT_549 -0.94 0.52 -0.14 4.69 2.98 -0.74 0.91 2.57 -5.43 -0.31
BR.T47D 5.37 -0.72 0.28 -3.10 1.12 0.52 0.30 2.31 0.61 -0.15
CNS.SF_268 -4.33 2.01 -0.31 1.63 -0.66 -0.05 0.66 1.69 -2.82 -1.86
C3orf59 FGD3 CA14 CPNE7 PTGES HELZ TBC1D2 TOR2A F3 BACE1
BR.MCF7 -0.89 0.83 -3.10 -0.81 3.15 0.11 -2.25 1.36 -4.28 1.70
BR.MDA_MB_231 -2.45 -5.80 -3.54 -2.37 2.09 -0.83 1.44 0.84 3.35 2.98
BR.HS578T -0.83 -6.57 -3.48 -0.76 -0.20 -0.42 -1.69 -0.47 0.54 3.33
BR.BT_549 0.17 -6.99 -3.31 0.97 0.66 -0.74 1.97 -0.55 -3.85 3.32
BR.T47D -0.20 -0.20 -3.15 -2.54 4.98 -0.03 -1.03 1.54 -3.64 2.90
CNS.SF_268 -0.29 -6.75 -3.04 -2.99 0.97 -0.16 -0.94 -0.65 1.01 3.01
SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21 LHFP ATP1A3 C10orf90
BR.MCF7 1.68 -0.62 0.84 -3.50 5.24 -2.93 -5.24 0.47 -7.45
BR.MDA_MB_231 1.37 0.35 -0.89 1.38 0.72 -0.22 1.29 1.16 -7.51
BR.HS578T 4.25 0.47 -0.99 0.18 -1.96 0.11 1.99 -0.15 -4.45
BR.BT_549 3.52 -0.20 -0.37 -4.80 -2.55 -0.87 3.01 0.28 -4.05
BR.T47D 0.53 0.48 1.29 -3.54 4.52 0.64 0.77 0.14 -7.74
CNS.SF_268 1.59 -0.97 -1.30 -0.11 -1.41 0.03 2.69 0.36 -7.25
SC65 WWC2 OCLN SMAD3 C9orf30 FKBP10 SYNM S100B DUSP4
BR.MCF7 1.03 -1.48 1.04 -0.37 -0.71 2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83 1.27 -2.93 1.84 1.58 -5.85 -0.68 -7.51 1.18
BR.HS578T 1.39 0.77 -3.88 1.46 0.85 3.33 0.96 -7.30 -1.05
BR.BT_549 0.90 0.67 -0.43 0.49 1.06 2.81 -1.07 -7.37 0.89
BR.T47D 1.33 0.63 0.28 -1.41 -1.38 0.41 -5.41 -7.74 0.93
CNS.SF_268 -0.12 1.52 0.20 1.58 1.43 1.84 -0.86 -7.25 2.18
LOC344978 GMFG S100B S100A1 LEPREL1 GMFG GPNMB SC65 LHFP
BR.MCF7 -1.33 -4.13 2.92 3.01 2.36 2.77 2.27 7.068981 2.732669
BR.MDA_MB_231 0.87 -2.11 2.31 2.58 4.89 2.26 2.05 4.881329 7.735258
BR.HS578T 1.41 -3.62 2.27 2.57 7.15 2.26 6.08 8.096910 9.634932
BR.BT_549 0.75 -3.18 2.34 2.58 7.10 2.31 2.08 7.085175 9.259418
BR.T47D -1.71 -3.89 2.29 4.75 2.21 2.27 2.10 7.649733 5.581497
CNS.SF_268 0.49 -4.21 2.24 2.53 2.40 2.28 2.12 6.435531 9.566662
C6orf218 PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7 2.286398 6.602582 3.19 5.44 5.88 1.98 2.60 3.54 2.83
BR.MDA_MB_231 2.286398 9.494251 5.41 5.21 4.67 1.77 2.36 5.85 5.23
BR.HS578T 2.286398 8.633170 5.04 3.89 6.16 1.72 2.32 6.48 5.34
BR.BT_549 2.286398 9.534073 4.29 3.79 4.67 1.84 2.49 5.86 3.49
BR.T47D 2.286398 7.052372 5.01 5.35 6.23 1.76 2.39 5.56 4.28
CNS.SF_268 2.286398 8.643488 5.07 3.91 4.18 1.77 2.39 5.96 3.32
S100A1 HSPBAP1 SOX10
BR.MCF7 2.93 4.11 2.69
BR.MDA_MB_231 2.72 4.12 2.44
BR.HS578T 2.65 4.12 2.40
BR.BT_549 2.73 4.29 2.61
BR.T47D 5.30 4.23 2.47
CNS.SF_268 2.70 4.03 2.46
List Select Var:
[1] "LHFP" "WWC2" "LEPREL1" "PVR" "VAMP3" "LOC344978"
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