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README.md
In ivygapSE: A SummarizedExperiment for Ivy-GAP data
ivygapSE
This package provides a SummarizedExperiment for Ivy-GAP metadata. See the ivyGlimpse app and an explanatory video.
The metadata and expression data are
as distributed by Allen Institute for Brain Science as of 31 May 2017.
A brief vignette is available, and the ivyGlimpse() function will initiate a shiny app
for exploring relationships between sub-block level image features quantified in 'subBlockDetails',
survival time, and expression patterns. Essentially, one can use a scatterplot of
a pair of image features to stratify the data.
ivyGlimpse will be accompanied by ivyTest, a tool for formally testing hypotheses
relating image characteristics to expression patterns, and ivyBridge, which will
emphasize interactive amalgamation of data and annotation related to glioblastoma.
Try the ivygapSE package in your browser
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ivygapSE documentation built on Nov. 8, 2020, 8:08 p.m.
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ivygapSE
This package provides a SummarizedExperiment for Ivy-GAP metadata. See the ivyGlimpse app and an explanatory video.
The metadata and expression data are as distributed by Allen Institute for Brain Science as of 31 May 2017.
A brief vignette is available, and the ivyGlimpse() function will initiate a shiny app for exploring relationships between sub-block level image features quantified in 'subBlockDetails', survival time, and expression patterns. Essentially, one can use a scatterplot of a pair of image features to stratify the data.
ivyGlimpse will be accompanied by ivyTest, a tool for formally testing hypotheses relating image characteristics to expression patterns, and ivyBridge, which will emphasize interactive amalgamation of data and annotation related to glioblastoma.
Try the ivygapSE package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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