proteinNameAndDescription: Get protein gene names and description from protein info of...

In isobar: Analysis and quantitation of isobarically tagged MSMS proteomics data

Description

Convenience functions to retrieve protein gene names and description for a list of protein group identifiers.

Usage

proteinNameAndDescription(protein.group, protein.g = reporterProteins(protein.group), collapse = FALSE)
proteinGeneName(protein.group, protein.g = reporterProteins(protein.group))
proteinDescription(protein.group, protein.g = reporterProteins(protein.group))
proteinID(protein.group, protein.g = reporterProteins(protein.group))

Arguments

protein.group	ProteinGroup object.
protein.g	protein group identifier.
collapse	If TRUE, the information for all protein.gs is combined.

Author(s)

Florian P Breitwieser

Examples

data(ibspiked_set1)
pg <- proteinGroup(ibspiked_set1)
protein.gs <- protein.g(pg,"CERU")
protein.gs
proteinNameAndDescription(pg,protein.gs)
proteinNameAndDescription(pg,protein.gs,collapse=TRUE)
proteinGeneName(pg,protein.gs)
proteinDescription(pg,protein.gs)  
proteinID(pg,protein.gs)  

isobar documentation built on Nov. 8, 2020, 7:48 p.m.