isobar-log: Log functions for IBSpectra objects

In isobar: Analysis and quantitation of isobarically tagged MSMS proteomics data

Description

The slot log of IBSpectra objects contains a matrix with two columns which contain a timestamp and message. Rownames relate to the item logged.

Used by correctIsotopeImpurities and normalize.

Usage

do.log(x, name, msg)

get.log(x, name)

is.logged(x, name)

Arguments

x	IBSpectra object
name	Name of property to be logged (translates to row name).
msg	Message to be logged for name.

Details

A warning message will be displayed if a already logged property is logged again.

Value

do.log: IBSpectra object with updated log. get.log:

Author(s)

Florian P Breitwieser

See Also

IBSpectra-class

Examples

    data(ibspiked_set1)
    ib <- normalize(correctIsotopeImpurities(ibspiked_set1))
    ib@log

isobar documentation built on Nov. 8, 2020, 7:48 p.m.