isobar: Analysis and quantitation of isobarically tagged MSMS proteomics data

isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.

Package overview README.md isobar for developers isobar for quantification of PTM datasets isobar package for iTRAQ and TMT protein quantification Usecases for isobar package

Vignettes Man pages API and functions Files

Package details
Author	Florian P Breitwieser <florian.bw@gmail.com> and Jacques Colinge <jacques.colinge@inserm.fr>, with contributions from Alexey Stukalov <stukalov@biochem.mpg.de>, Xavier Robin <xavier.robin@unige.ch> and Florent Gluck <florent.gluck@unige.ch>
Bioconductor views	Bioinformatics ImmunoOncology MassSpectrometry MultipleComparisons Proteomics QualityControl
Maintainer	Florian P Breitwieser <florian.bw@gmail.com>
License	LGPL-2
Version	1.36.0
URL	https://github.com/fbreitwieser/isobar
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("isobar")`