sites: Sample Retrovirus Integration Sites data

In hiAnnotator: Functions for annotating GRanges objects

Description

A sample dataset containing collection of unique HIV & MLV integration sites in the human genome mapped to UCSC freeze hg18 from PMID: 12805549.

Format

A data frame with 1303 rows and 5 variables

Details

• Sequence. Name of the DNA sequence which was aligned to the host genome. This is also a unique ID.

• Position. The genomic coordinate of the integration site.

• Chr. The chromosome of the integration site.

• Ort. The orientation or strand of the integration site.

• virus. Name of the virus used for the experiment and a given sequencing clone.

Source

http://www.ncbi.nlm.nih.gov/pubmed/?term=12805549

hiAnnotator documentation built on Nov. 8, 2020, 7:27 p.m.