hiAnnotator: Annotating GRanges objects with hiAnnotator.
In hiAnnotator: Functions for annotating GRanges objects
Description
hiAnnotator contains set of functions which allow users to annotate a
GRanges object with custom set of annotations. The basic philosophy of this
package is to take two GRanges objects (query & subject) with common set of
seqnames (i.e. chromosomes) and return associated annotation per seqnames
and rows from the query matching seqnames and rows from the subject
(i.e. genes or cpg islands). The package comes with three types of
annotation functions which calculates if a position from query is: within
a feature, near a feature, or count features in defined window sizes.
Moreover, one can utilize parallel backend for each annotation function
to utilize the foreach package. In addition, the package is equipped with
wrapper functions, which finds appropriate columns needed to make a GRanges
object from a common dataframe.
Author(s)
Nirav V Malani
hiAnnotator documentation built on Nov. 8, 2020, 7:27 p.m.
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Description
hiAnnotator contains set of functions which allow users to annotate a GRanges object with custom set of annotations. The basic philosophy of this package is to take two GRanges objects (query & subject) with common set of seqnames (i.e. chromosomes) and return associated annotation per seqnames and rows from the query matching seqnames and rows from the subject (i.e. genes or cpg islands). The package comes with three types of annotation functions which calculates if a position from query is: within a feature, near a feature, or count features in defined window sizes. Moreover, one can utilize parallel backend for each annotation function to utilize the foreach package. In addition, the package is equipped with wrapper functions, which finds appropriate columns needed to make a GRanges object from a common dataframe.
Author(s)
Nirav V Malani
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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