gCMAPData-dataset: Example 'NChannelSet'
In gCMAP: Tools for Connectivity Map-like analyses
Description
The gCMAPData object is an NChannelSet object with 3 samples x 1000
features x 3 channels (p-value, z-score and log_fc).
Usage
1
Examples
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data(gCMAPData)
gene.set.collection <- induceCMAPCollection(gCMAPData, "z", higher=2, lower=-2)
## comparison with a single user-provided profile of z-scores
profile <- assayDataElement(gCMAPData, "z")[,1]
gsealm_jg_score(profile, gene.set.collection)
gCMAP documentation built on April 29, 2020, 3:54 a.m.
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Description
The gCMAPData object is an NChannelSet object with 3 samples x 1000 features x 3 channels (p-value, z-score and log_fc).
Usage
1 |
Examples
1 2 3 4 5 6 7 | data(gCMAPData)
gene.set.collection <- induceCMAPCollection(gCMAPData, "z", higher=2, lower=-2)
## comparison with a single user-provided profile of z-scores
profile <- assayDataElement(gCMAPData, "z")[,1]
gsealm_jg_score(profile, gene.set.collection)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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