gs_update_channels: Update the channel information of a GatingSet (c++ part)

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

It updates the channels stored in gates,compensations and transformations based on given mapping between the old and new channel names.

Usage

gs_update_channels(gs, map, all = TRUE)

Arguments

gs	a GatingSet object
map	data.frame contains the mapping from old (case insensitive) to new channel names Note: Make sure to remove the '<' or '>' characters from 'old' name because the API tries to only look at the raw channel name so that the gates with both prefixed and non-prefixed names could be updated.
all	logical whether to update the flow data as well

Value

when 'all' is set to TRUE, it returns a new GatingSet but it still shares the same underling c++ tree structure with the original GatingSet otherwise it returns nothing (less overhead.)

Examples

## Not run: 
  ##this will update both "Qdot 655-A" and "<Qdot 655-A>"
 gs <- gs_update_channels(gs, map = data.frame(old = c("Qdot 655-A")
                                         , new = c("QDot 655-A")
                                         )
                     )  

## End(Not run)

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.