barcode: The barcode dataset

In flowPeaks: An R package for flow data clustering

Description

A flow cytometry data that is used barcode to measure many samples simultaneusly

Usage

data(barcode)

Format

An object (barcode) of data frame with 180912 rows and 3 columns and a vector (barcode.cid) for the cluster labels accoring to the manual gating.

Source

The data is a random subset of the full data set for Figure 3A of the paper (Sugar et al 2010), This subset was used to do all comparisons in the paper (Ge et al 2012) with other clustering algorithms.

References

Sugar I. P. and Sealfon S. C., Misty Mountain clustering: application to fast unsupervised flow cytometry gating, BMC Bioinformatcs, 2010, 11:502.

Ge Y. et al, flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding, 2012, Bioinformatics 8(15):2052-8

flowPeaks documentation built on Nov. 8, 2020, 5:02 p.m.