Man pages for flowCore
flowCore: Basic structures for flow cytometry data
| arcsinhTransform | Create the definition of an arcsinh transformation function... |
| asinht-class | Class "asinht" |
| asinhtGml2-class | Class asinhtGml2 |
| biexponentialTransform | Compute a transform using the 'biexponential' function |
| boundaryFilter-class | Class "boundaryFilter" |
| characterOrNumeric-class | Class "characterOrNumeric" |
| characterOrParameters-class | Class "characterOrParameters" |
| characterOrTransformation-class | Class "characterOrTransformation" |
| checkOffset | Fix the offset when its values recorded in header and TEXT... |
| coerce | Convert an object to another class |
| collapse_desc | Coerce the list of the keywords into a character Also flatten... |
| compensatedParameter-class | Class "compensatedParameter" |
| compensation-class | Class "compensation" |
| complementFilter-class | Class complementFilter |
| concreteFilter-class | Class "concreteFilter" |
| CytoExploreR_exports | CytoExploreR exports |
| decompensate | Decompensate a flowFrame |
| dg1polynomial-class | Class "dg1polynomial" |
| each_col | Methods to apply functions over flowFrame margins |
| EHtrans-class | Class "EHtrans" |
| ellipsoidGate-class | Class "ellipsoidGate" |
| estimateMedianLogicle | Estimates a common logicle transformation for a flowSet. |
| exponential-class | Class "exponential" |
| expressionFilter-class | Class "expressionFilter" |
| FCSTransTransform | Computes a transform using the 'iplogicle' function |
| filter-and-methods | Take the intersection of two filters |
| filter-class | A class for representing filtering operations to be applied... |
| filterDetails-methods | Obtain details about a filter operation |
| filter-in-methods | Filter-specific membership methods |
| filterList-class | Class "filterList" |
| filter-methods | Filter FCS files |
| filter-on-methods | Methods for Function %on% in Package 'flowCore' |
| filterReference-class | Class filterReference |
| filterResult-class | Class "filterResult" |
| filterResultList-class | Class "filterResultList" |
| filters-class | Class "filters" and "filtersList" |
| filterSummary-class | Class "filterSummary" |
| filterSummaryList-class | Class "filterSummaryList" |
| flowCore-package | flowCore: Basic structures for flow cytometry data |
| flowFrame-class | 'flowFrame': a class for storing observed quantitative... |
| flowSet-class | 'flowSet': a class for storing flow cytometry raw data from... |
| flowSet_to_list | Convert a flowSet to a list of flowFrames |
| fr_append_cols | Append data columns to a flowFrame |
| fsApply | Apply a Function over values in a flowSet |
| getChannelMarker | get channel and marker information from a 'flowFrame' that... |
| getIndexSort | Extract Index Sorted Data from an FCS File |
| GvHD | Extract of a Graft versus Host Disease monitoring experiment... |
| hyperlog-class | Class "hyperlog" |
| hyperlogtGml2-class | Class hyperlogtGml2 |
| identifier-methods | Retrieve the GUID of flowCore objects |
| intersectFilter-class | Class intersectFilter |
| inverseLogicleTransform | Computes the inverse of the transform defined by the... |
| invsplitscale-class | Class "invsplitscale" |
| keyword-methods | Methods to retrieve keywords of a flowFrame |
| kmeansFilter-class | Class "kmeansFilter" |
| linearTransform | Create the definition of a linear transformation function to... |
| lintGml2-class | Class lintGml2 |
| lnTransform | Create the definition of a ln transformation function... |
| logarithm-class | Class "logarithm" |
| logicalFilterResult-class | Class "logicalFilterResult" |
| logicletGml2-class | Class logicletGml2 |
| logicleTransform | Computes a transform using the 'logicle_transform' function |
| logtGml2-class | Class logtGml2 |
| logTransform | Create the definition of a log transformation function (base... |
| manyFilterResult-class | Class "manyFilterResult" |
| markernames | get or update the marker names |
| multipleFilterResult-class | Class "multipleFilterResult" |
| normalization-class | Class "normalization" |
| nullParameter-class | Class "nullParameter" |
| parameterFilter-class | Class "parameterFilter" |
| parameters-class | Class "parameters" |
| parameters-methods | Obtain information about parameters for flow cytometry... |
| parameterTransform-class | Class "parameterTransform" |
| polygonGate-class | Class "polygonGate" |
| polytopeGate-class | Define filter boundaries |
| quadGate-class | Class "quadGate" |
| quadratic-class | Class "quadratic" |
| quadraticTransform | Create the definition of a quadratic transformation function... |
| randomFilterResult-class | Class "randomFilterResult" |
| ratio-class | Class "ratio" |
| ratiotGml2-class | Class "ratiotGml2" |
| read.FCS | Read an FCS file |
| read.FCSheader | Read the TEXT section of a FCS file |
| read.flowSet | Read a set of FCS files |
| rectangleGate-class | Class "rectangleGate" |
| rotate_gate | Simplified geometric rotation of gates |
| sampleFilter-class | Class "sampleFilter" |
| scale_gate | Simplified geometric scaling of gates |
| scaleTransform | Create the definition of a scale transformation function to... |
| setOperationFilter-class | Class "setOperationFilter" |
| shift_gate | Simplified geometric translation of gates |
| singleParameterTransform-class | Class "singleParameterTransform" |
| sinht-class | Class "sinht" |
| split-methods | Methods to split flowFrames and flowSets according to filters |
| splitscale-class | Class "splitscale" |
| splitScaleTransform | Compute the split-scale transformation describe by FL. Battye |
| squareroot-class | Class "squareroot" |
| subsetFilter-class | Class subsetFilter |
| Subset-methods | Subset a flowFrame or a flowSet |
| summarizeFilter-methods | Methods for function summarizeFilter |
| timeFilter-class | Class "timeFilter" |
| transform | Transform a flowFrame or flowSet |
| transformation-class | Class "transformation" |
| transform-class | 'transform': a class for transforming flow-cytometry data by... |
| transformFilter-class | A class for encapsulating a filter to be performed on... |
| transform_gate | Simplified geometric transformation of gates |
| transformList-class | Class "transformList" |
| transformMap-class | A class for mapping transforms between parameters |
| transformReference-class | Class "transformReference" |
| truncateTransform | Create the definition of a truncate transformation function... |
| unionFilter-class | Class unionFilter |
| unitytransform-class | Class "unitytransform" |
| updateTransformKeywords | modify description to reflect the transformation Involve... |
| validFilters | Check if all filters in a filters matches same paramters |
| write.FCS | Write an FCS file |
| write.flowSet | Write an FCS file |
