GvHD: Extract of a Graft versus Host Disease monitoring experiment...
In flowCore: flowCore: Basic structures for flow cytometry data
Description
Usage
Format
Details
Source
References
Description
A flow cytometry high throughput screening was used to identify biomarkers
that would predict the development of GvHD. The GvHD dataset is an extract
of a collection of weekly peripheral blood samples obtained from patients
following allogenic blood and marrow transplant. Samples were taken at
various time points before and after graft.
Usage
1
Format
The format is an object of class flowSet composed of 35
flowFrames. Each flowFrame corresponds to one sample at one
time point.
The phenodata lists:
- Patient
The patient Id code
- Visit
The number of visits to the hospital
- Days
The number of days since the graft. Negative values correpond to
days before the graft.
- Grade
Grade of the cancer
Details
This GvHD dataset represents the measurements of one biomarker (leukocyte)
for 5 patients over 7 visits (7 time points). The blood samples were labeled
with four different fluorescent probes to identify the biomarker and the
fluorescent intensity was determined for at least ten thousand cells per
sample.
Source
Complete dataset available at
http://www.ficcs.org/software.html#Data_Files, the Flow Informatics
and Computational Cytometry Society website (FICCS)
References
Rizzieri DA et al. J Clin Oncol. 2007 Jan 16; [Epub ahead of
print] PMID: 17228020
flowCore documentation built on Nov. 8, 2020, 5:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Details Source References
Description
A flow cytometry high throughput screening was used to identify biomarkers that would predict the development of GvHD. The GvHD dataset is an extract of a collection of weekly peripheral blood samples obtained from patients following allogenic blood and marrow transplant. Samples were taken at various time points before and after graft.
Usage
1 |
Format
The format is an object of class flowSet composed of 35
flowFrames. Each flowFrame corresponds to one sample at one
time point.
The phenodata lists:
- Patient
The patient Id code
- Visit
The number of visits to the hospital
- Days
The number of days since the graft. Negative values correpond to days before the graft.
- Grade
Grade of the cancer
Details
This GvHD dataset represents the measurements of one biomarker (leukocyte) for 5 patients over 7 visits (7 time points). The blood samples were labeled with four different fluorescent probes to identify the biomarker and the fluorescent intensity was determined for at least ten thousand cells per sample.
Source
Complete dataset available at http://www.ficcs.org/software.html#Data_Files, the Flow Informatics and Computational Cytometry Society website (FICCS)
References
Rizzieri DA et al. J Clin Oncol. 2007 Jan 16; [Epub ahead of print] PMID: 17228020
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.