deepSNV
Detection of subclonal SNVs in deep sequencing data.

Package index
Search the deepSNV package
Vignettes
Functions
83
Source code
15
Man pages
35
Home
/
Bioconductor
/
deepSNV
/
counts: Example count table

counts: Example count table
In deepSNV: Detection of subclonal SNVs in deep sequencing data.

Description Examples

Description

A table with counts of the HIVmix data set. Used for minimal unit testing.

Examples

1
2
3
data("counts", package="deepSNV")
countsFromBam <- bam2R(file = system.file("extdata", "test.bam", package="deepSNV"), chr="B.FR.83.HXB2_LAI_IIIB_BRU_K034", start = 3120, stop=3140, q = 10)
all(counts == countsFromBam)

deepSNV documentation built on Nov. 8, 2020, 8:01 p.m.

Related to counts in deepSNV...

deepSNV index
Package overview README.md An R package for detecting low frequency variants in deep sequencing experiments Subclonal variant calling with multiple samples and prior knowledge using shearwater Shearwater ML

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close