get_classes-ConsensusPartition-method: Get subgroup labels
In cola: A Framework for Consensus Partitioning
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get subgroup labels
Usage
1
2
## S4 method for signature 'ConsensusPartition'
get_classes(object, k = object@k)
Arguments
object
A ConsensusPartition-class object.
k
Number of subgroups.
Value
A data frame with subgroup labels and other columns which are entropy of the percent membership matrix
and the silhouette scores which measure the stability of a sample to stay in its group.
If k is not specified, it returns a data frame with subgroup labels from all k.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1
2
3
4
data(golub_cola)
obj = golub_cola["ATC", "skmeans"]
get_classes(obj, k = 2)
get_classes(obj)
cola documentation built on Nov. 8, 2020, 8:12 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get subgroup labels
Usage
1 2 | ## S4 method for signature 'ConsensusPartition'
get_classes(object, k = object@k)
|
Arguments
object |
A |
k |
Number of subgroups. |
Value
A data frame with subgroup labels and other columns which are entropy of the percent membership matrix and the silhouette scores which measure the stability of a sample to stay in its group.
If k is not specified, it returns a data frame with subgroup labels from all k.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1 2 3 4 | data(golub_cola)
obj = golub_cola["ATC", "skmeans"]
get_classes(obj, k = 2)
get_classes(obj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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