cola_report-ConsensusPartitionList-method: Make HTML report from the ConsensusPartitionList object
In cola: A Framework for Consensus Partitioning

Description Usage Arguments Details Value Author(s) Examples

Make HTML report from the ConsensusPartitionList object

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## S4 method for signature 'ConsensusPartitionList'
cola_report(object, output_dir = getwd(), mc.cores = 1,
    title = "cola Report for Consensus Partitioning", env = parent.frame())

`object`	A `ConsensusPartitionList-class` object.
`output_dir`	The output directory where the report is saved.
`mc.cores`	Multiple cores to use.
`title`	Title of the report.
`env`	Where the objects in the report are found, internally used.

The ConsensusPartitionList-class object contains results for all combinations of top-value methods and partitioning methods. This function generates a HTML report which contains all plots and tables for every combination of method.

The report generation may take a while because it generates A LOT of heatmaps.

Examples of reports can be found at https://jokergoo.github.io/cola_collection/ .

No value is returned.

Zuguang Gu <z.gu@dkfz.de>

if(FALSE) {
# the following code is runnable
data(golub_cola)
cola_report(golub_cola[c("SD", "MAD"), c("hclust", "skmeans")], output_dir = "~/test_cola_cl_report")
}