build_atlas: Function to combine records into single atlas

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

Function to combine records into single atlas

Usage

build_atlas(matrix_fns = NULL, genes_fn, matrix_objs = NULL, output_fn = NULL)

Arguments

matrix_fns	character vector of paths to study matrices stored as .rds files. If a named character vector, then the name will be added as a suffix to the cell type name in the final matrix. If it is not named, then the filename will be used (without .rds)
genes_fn	text file with a single column containing genes and the ordering desired in the output matrix
matrix_objs	Checks to see whether .rds files will be read or R objects in a local environment. A list of environmental objects can be passed to matrx_objs, and that names will be used, otherwise defaults to numbers
output_fn	output filename for .rds file. If NULL the matrix will be returned instead of saving

Value

Combined matrix with all genes given

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.