laneSubsample: Subsample short read alignment locations
In chipseq: chipseq: A package for analyzing chipseq data

Subsamples data from multiple lanes on a per-chromosome basis.

1	laneSubsample(lane1, lane2, fudge = 0.05)

`lane1, lane2`	Two lanes of data, each of class `"GRanges"`.
`fudge`	A numeric fudge factor. For each chromosome, if the difference in the sizes relative to the size of the first dataset is less than `fudge`, no subsampling is done.

laneSubsample returns a list similar to its input, but with the larger dataset subsampled to be similar to the smaller one.

D. Sarkar

data(cstest)
## subsample to compare lanes
cstest.sub <- laneSubsample(cstest[[1]], cstest[[2]])
unlist(cstest.sub)

chipseq documentation built on Nov. 8, 2020, 5:19 p.m.

chipseq index

A Sample ChIP-Seq analysis workflow

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