getCases: Get cases for selected Studies. The Cases are the descrption...
In canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
Description
Usage
Value
Examples
Description
Get cases for selected Studies. The Cases are the descrption of the samples from patients. The samples can be subdivided by the type of assays as, sequencing, CNA, Mutation, Methylation.
Usage
1
getCases()
Value
a dataframe with cases
Examples
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# Create CGDS object
cgds<-CGDS("http://www.cbioportal.org/")
# Get list of cancer studies at server
Studies <- getCancerStudies(cgds)[,2]
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy <- getCancerStudies(cgds)[2,1]
mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1]
## Not run:
##getCases()
## End(Not run)
canceR documentation built on Nov. 8, 2020, 7:21 p.m.
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Description Usage Value Examples
Description
Get cases for selected Studies. The Cases are the descrption of the samples from patients. The samples can be subdivided by the type of assays as, sequencing, CNA, Mutation, Methylation.
Usage
1 | getCases()
|
Value
a dataframe with cases
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | # Create CGDS object
cgds<-CGDS("http://www.cbioportal.org/")
# Get list of cancer studies at server
Studies <- getCancerStudies(cgds)[,2]
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy <- getCancerStudies(cgds)[2,1]
mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1]
## Not run:
##getCases()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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