sortOmicsDataByRow: Sort Omics Data by Row
In caOmicsV: Visualization of multi-dimentional cancer genomics data

Description Usage Arguments Value Author(s) Examples

Sort omics data by row (genes) in order to get omics data in a specific order, e.g., ordered by p values or by fold changes in expression data. After sorting, the order of row names in omics data will be same as the second argument.

1	sortOmicsDataByRow(omicsData, geneNames)

`omicsData`	a data frame that holds genomic data such as gene expression, SNV, RNASeq. The first column must be gene names that are same as the second argument except of order.
`geneNames`	character vector, gene names in a given order (such as by p values). Redundant gene names are allowed.

omicsData

copy of the first argument with new row order.

Henry Zhang

    data(RNASeqDemoData)
    geneNames <- as.character(RNASeqDemoData[,1])
    geneNames <- geneNames[order(RNASeqDemoData[,2])]
    expr <- sortOmicsDataByRow(RNASeqDemoData, geneNames)