sample_rnadata: sample_rnadata

In blacksheepr: Outlier Analysis for pairwise differential comparison

Description

Example RNA data for Outlier analysis This example data is a subset of the data used in the CPTAC3 Breast Cancer exploration study: (doi: 10.1038/nature18003). Each row corresponds to a gene, and each column is a sample. The values within the table are normalized transcript counts.

Usage

sample_rnadata

Format

A data frame with 4317 rows and 76 variables:

TCGA-A2-A0CM

RNA levels for each gene

TCGA-A2-A0D2

RNA levels for each gene

TCGA-A2-A0EQ

RNA levels for each gene

TCGA-A2-A0EV

RNA levels for each gene

TCGA-A2-A0EX

RNA levels for each gene

TCGA-A2-A0EY

RNA levels for each gene

TCGA-A2-A0SW

RNA levels for each gene

TCGA-A2-A0SX

RNA levels for each gene

TCGA-A2-A0T3

RNA levels for each gene

TCGA-A2-A0T6

RNA levels for each gene

TCGA-A2-A0YC

RNA levels for each gene

TCGA-A2-A0YD

RNA levels for each gene

TCGA-A2-A0YF

RNA levels for each gene

TCGA-A2-A0YG

RNA levels for each gene

TCGA-A2-A0YM

RNA levels for each gene

TCGA-A7-A0CE

RNA levels for each gene

TCGA-A7-A0CJ

RNA levels for each gene

TCGA-A7-A13F

RNA levels for each gene

TCGA-A8-A06N

RNA levels for each gene

TCGA-A8-A06Z

RNA levels for each gene

TCGA-A8-A076

RNA levels for each gene

TCGA-A8-A079

RNA levels for each gene

TCGA-A8-A08Z

RNA levels for each gene

TCGA-A8-A09G

RNA levels for each gene

TCGA-AN-A04A

RNA levels for each gene

TCGA-AN-A0AJ

RNA levels for each gene

TCGA-AN-A0AL

RNA levels for each gene

TCGA-AN-A0AM

RNA levels for each gene

TCGA-AN-A0FK

RNA levels for each gene

TCGA-AN-A0FL

RNA levels for each gene

TCGA-AO-A03O

RNA levels for each gene

TCGA-AO-A0J6

RNA levels for each gene

TCGA-AO-A0J9

RNA levels for each gene

TCGA-AO-A0JC

RNA levels for each gene

TCGA-AO-A0JE

RNA levels for each gene

TCGA-AO-A0JJ

RNA levels for each gene

TCGA-AO-A0JL

RNA levels for each gene

TCGA-AO-A0JM

RNA levels for each gene

TCGA-AO-A126

RNA levels for each gene

TCGA-AO-A12B

RNA levels for each gene

TCGA-AO-A12D

RNA levels for each gene

TCGA-AO-A12E

RNA levels for each gene

TCGA-AO-A12F

RNA levels for each gene

TCGA-AR-A0TR

RNA levels for each gene

TCGA-AR-A0TT

RNA levels for each gene

TCGA-AR-A0TV

RNA levels for each gene

TCGA-AR-A0TX

RNA levels for each gene

TCGA-AR-A0U4

RNA levels for each gene

TCGA-AR-A1AP

RNA levels for each gene

TCGA-AR-A1AS

RNA levels for each gene

TCGA-AR-A1AV

RNA levels for each gene

TCGA-AR-A1AW

RNA levels for each gene

TCGA-BH-A0AV

RNA levels for each gene

TCGA-BH-A0BV

RNA levels for each gene

TCGA-BH-A0C1

RNA levels for each gene

TCGA-BH-A0C7

RNA levels for each gene

TCGA-BH-A0DD

RNA levels for each gene

TCGA-BH-A0DG

RNA levels for each gene

TCGA-BH-A0E1

RNA levels for each gene

TCGA-BH-A0E9

RNA levels for each gene

TCGA-BH-A18N

RNA levels for each gene

TCGA-BH-A18Q

RNA levels for each gene

TCGA-BH-A18U

RNA levels for each gene

TCGA-C8-A12L

RNA levels for each gene

TCGA-C8-A12T

RNA levels for each gene

TCGA-C8-A12U

RNA levels for each gene

TCGA-C8-A12V

RNA levels for each gene

TCGA-C8-A12Z

RNA levels for each gene

TCGA-C8-A130

RNA levels for each gene

TCGA-C8-A131

RNA levels for each gene

TCGA-C8-A134

RNA levels for each gene

TCGA-C8-A135

RNA levels for each gene

TCGA-C8-A138

RNA levels for each gene

TCGA-D8-A142

RNA levels for each gene

TCGA-E2-A154

RNA levels for each gene

TCGA-E2-A158

RNA levels for each gene

Source

https://cptac-data-portal.georgetown.edu/cptac/s/S029

blacksheepr documentation built on Nov. 8, 2020, 7:57 p.m.