goodAvgQuality: This filters out sequences which have bad average quality...
In amplican: Automated analysis of CRISPR experiments
Description
Usage
Arguments
Value
View source: R/helpers_filters.R
Description
This filters out sequences which have bad average quality readings.
Usage
1
goodAvgQuality(reads, avg = 30)
Arguments
reads
(ShortRead object) Loaded reads from fastq.
avg
(numeric) This is what the average score of the quality of
sequence should be. For example, if we have a sequence with nucleotides which
have quality 70-70-70, the average would be 70. If set the average to 70 or
less the sequence will pass. If we set the average to 71 the sequence will
not pass. The average is set to 0 by default.
Value
(boolean) Logical vector with the valid rows as TRUE.
amplican documentation built on Nov. 8, 2020, 11:10 p.m.
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Description Usage Arguments Value
View source: R/helpers_filters.R
Description
This filters out sequences which have bad average quality readings.
Usage
1 | goodAvgQuality(reads, avg = 30)
|
Arguments
reads |
(ShortRead object) Loaded reads from fastq. |
avg |
(numeric) This is what the average score of the quality of sequence should be. For example, if we have a sequence with nucleotides which have quality 70-70-70, the average would be 70. If set the average to 70 or less the sequence will pass. If we set the average to 71 the sequence will not pass. The average is set to 0 by default. |
Value
(boolean) Logical vector with the valid rows as TRUE.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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