tssArrayProperties: tssArrayProperties

In TSRchitect: Promoter identification from large-scale TSS profiling data

Description

An internal function that calculates various properties for a TSR derived in tsrCluster()

Usage

tssArrayProperties(tssArray, seqName, strand)

Arguments

tssArray	an object containing TSS coordinates and their abundances. (data.frame)
seqName	the name of the chromosome or scaffold. (character)
strand	the strand that the TSR tags are located. (character)

Value

A vector containing information about the TSR. The returned vector is as follows: seqName (character), TSR start (numeric), TSR end (numeric), strand (character), number of TSSs (numeric), number of tags (numeric), fraction of tags in highest peak (numeric), TSR width (numeric), TSR torque (numeric), Shape Index (numeric), Modified Shape Index (numeric)

TSRchitect documentation built on Nov. 8, 2020, 8:11 p.m.