getTSScountData-methods: *getTSScountData*

In TSRchitect: Promoter identification from large-scale TSS profiling data

Description

an accessor function that retrieves the contents of a specified slot "tssCountData"/"tssCountDataMerged" from a given tssObject

Usage

getTSScountData(experimentName, slotType, slot)

## S4 method for signature 'tssObject,character,numeric'
getTSScountData(experimentName, slotType = c("replicates", "merged"), slot)

Arguments

experimentName	an S4 object of class tssObject
slotType	'character' which data type is to be selected. Either "replicates" (tssCountData) or "merged" (tssCountDataMerged)
slot	'numeric' a number corresponding to the slot in "tssCountData"/"tssCountDataMerged" to be retrieved.

Value

the contents of the selected slot (either "tssCountData" or "tssCountDataMerged" are returned)

Examples

load(system.file("extdata", "tssObjectExample.RData",
package="TSRchitect"))
ex.tssCountData <- getTSScountData(experimentName=tssObjectExample,
slotType="replicates", slot = 1)
ex.tssCountData

TSRchitect documentation built on Nov. 8, 2020, 8:11 p.m.