markClusterCol: markClusterCol

In Spaniel: Spatial Transcriptomics Analysis

Description

A function to mark the columns containing cluster information in the metadata or colData of a Seurat or SCE object. Columns are marked with "cluster_" prefix.

Usage

markClusterCol(object, pattern)

Arguments

object	Either a Seurat or SCE object containing clustering information
pattern	pattern indicating which columns contain cluster information

Value

A Seurat or SCE object

Examples

SeuratObj <- readRDS(file.path(system.file(package = "Spaniel"), 
                                "extdata/SeuratData.rds"))
SeuratObj <- markClusterCol(SeuratObj, "res")

Spaniel documentation built on Nov. 8, 2020, 5:54 p.m.