ImputeTesting: Impute testing

In Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

Description

Tests the euclidean distance error for imputation using knn and markers of interest

Usage

ImputeTesting(k.titration, cells, input.markers, test.markers)

Arguments

k.titration	a vector integer values of k to be tested
cells	a matrix of cells by features used as original input
input.markers	markers to be used for the knn calculation
test.markers	the markers to be tested for imputation (either surface or scone)

Value

the median imputation error for each value k tested

Examples

ImputeTesting(k.titration = c(10, 20),
  cells = wand.combined,
  input.markers = input.markers,
  test.markers = funct.markers)

Sconify documentation built on Nov. 8, 2020, 6:45 p.m.