FcsToTibble: Takes a file as input and returns a data frame of cells by...

In Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

Description

This function is a quick way to take the exprs content of a fcs file, do an asinh transform, and create a tibble data structure that can be further manipulated. Our default transform is asinh, but you just have to change the transform to anything else, and you'll get the raw data. This function is used in the main function process.multiple.files

Usage

FcsToTibble(file, transform = "asinh")

Arguments

file	the fcs file containing cell infomration
transform	if set to asinh, then asinh transforms with scale arg 5

Value

tibble of info contained within the fcs file

Examples

file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
    package = "Sconify")
FcsToTibble(file)

Sconify documentation built on Nov. 8, 2020, 6:45 p.m.