GeneExp: RNA-seq data matrix from GTEx

In SEPIRA: Systems EPigenomics Inference of Regulatory Activity

Description

GeneExp is a gene expression data matrix with rows (467 genes) and 520 columns. This data matrix is a subset of GTEx RNA-seq data which is a very big dataset. In this subset we only randomly chose 20 samples from each tissue type with more than 50 samples in the original GTEx data set.

Usage

data("GeneExp")

Format

The format is: num [1:467, 1:520] 0.0361 0.758 0.5484 2.3569 6.1973 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:467] "9496" "22797" "7080" "6943" ... ..$ : chr [1:520] "Adipose Tissue" "Adipose Tissue" "Adipose Tissue" "Adipose Tissue" ...

Source

https://www.gtexportal.org/home/

Examples

data(GeneExp)
## view the first 5 rows and columns
GeneExp[1:5,1:5]

SEPIRA documentation built on Nov. 8, 2020, 6:33 p.m.