Files in Ringo

R Investigation of ChIP-chip Oligoarrays

R/sigGOTable.R R/chipAlongChrom1.R R/util.R R/sparse.R R/runningMedian.R R/Class_cher.R R/AllGenerics.R R/twoGaussianNull.R R/probeAnnoFunctions.R R/computeSlidingT.R R/chipAlongChrom.R R/preprocess.R R/zzz.R R/regionoverlap.R R/Class_probeAnno.R R/cerFinding.R R/mmeansd.R R/plotBinaryMatrix.R R/autocorr.R R/exportTracks.R R/upperBoundNull.R R/quantilesOverPositions.R R/readNimblegen.R R/corrPlot.R R/arrayImage.R R/enrichedregion.R man/findChersOnSmoothed.Rd man/plot_cher.Rd man/posToProbeAnnoEnvironment.Rd man/cherByThreshold.Rd man/regionoverlap.Rd man/ftr2xys.Rd man/upperBoundNull.Rd man/asExprSet.Rd man/extractProbeAnno.Rd man/sigGOTable.Rd man/plotBM.Rd man/chipAlongChrom.Rd man/readNimblegen.Rd man/sliding_quantile.Rd man/computeRunningMedians.Rd man/getFeats.Rd man/features2Probes.Rd man/twoGaussiansNull.Rd man/cherClass.Rd man/sliding_meansd.Rd man/quantilesOverPositions.Rd man/probeAnnoClass.Rd man/chipAlongChromOld.Rd man/newCER.Rd man/compute_sliding_t.Rd man/corrPlot.Rd man/compute_gc.Rd man/nimblegenNorm.Rd man/plotAutocorr.Rd man/qopS4.Rd man/exportCherList.Rd man/preprocess.Rd man/Ringo-internal.Rd man/arrayImage.Rd man/relateCERs.Rd man/autocorr.Rd man/validProbeAnno.Rd man/nonzero.Rd inst/doc/Ringo.pdf inst/doc/Ringo.R inst/scripts/graphChers2Transcripts.R inst/scripts/retrieveGenomicFeatureAnnotation.R inst/scripts/convertSampleKeyTxt.R inst/scripts/mapReportersWithBiostrings.R inst/scripts/makeProbeAnno.R