Description Usage Value Author(s) References Examples
Note that some arguments to the bowtie2 are invalid if they are already handled as explicit function arguments.
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bowtie2 available arguments and their usage.
Zheng Wei
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature methods, 9(4), 357-359.
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