serialzeStudyData: Serialize the Study Data

In RImmPort: RImmPort: Enabling Ready-for-analysis Immunology Research Data

Description

Load specific studies from the database and save it in .rds format in a local file directory

Usage

serialzeStudyData(study_ids, data_dir)

Arguments

study_ids	List of study indentifiers
data_dir	Path to a file folder where the .rds study files will be saved into

Value

List of study indentifiers that were serialized successfully

Examples

library(DBI)
library(sqldf)
studies_dir <- system.file("extdata", "ImmPortStudies", package = "RImmPort")
db_dir <- file.path(studies_dir, "Db")
sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite"))
setImmPortDataSource(sqlite_conn)
# the folder where the .rds files will be stored
rds_dir <- file.path(studies_dir, "Rds")
study_ids <- c('SDY139', 'SDY208')
serialzeStudyData(study_ids, rds_dir)

RImmPort documentation built on Nov. 8, 2020, 5:54 p.m.