JacCol_constr_noLab: The jacobian of the response function without taxon labels

In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description

The jacobian of the response function without taxon labels

Usage

JacCol_constr_noLab(
  betas,
  X,
  reg,
  thetasMat,
  muMarg,
  psi,
  n,
  v,
  preFabMat,
  allowMissingness,
  naId
)

Arguments

betas	a vector of regression parameters with length v
X	the nxp data matrix
reg	a matrix of regressors of dimension nxv
thetasMat	A matrix of dispersion parameters
muMarg	offset matrix of dimension nxp
psi	a scalar, the importance parameter
n	an integer, number of rows of X
v	an integer, the number of parameters of the response function
preFabMat	a prefabricated matrix
allowMissingness	A boolean, are missing values present
naId	The numeric index of the missing values in X

Value

The jacobian (a v-by-v matrix)

RCM documentation built on Nov. 8, 2020, 5:22 p.m.