getTxdbFeaturesFromGRanges: getTxdbFeaturesFromGRanges
In RCAS: RNA Centric Annotation System
Description
Usage
Arguments
Value
Examples
Description
This function takes as input a GRanges object that contains GTF file contents
(e.g from the output of importGtf function).
Then extracts the coordinates of gene features
such as promoters, introns, exons, 5'/3' UTRs and
whole transcripts.
Usage
1
getTxdbFeaturesFromGRanges(gffData)
Arguments
gffData
A GRanges object imported by importGtf function
Value
A list of GRanges objects
Examples
1
2
data(gff)
txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff)
RCAS documentation built on Nov. 8, 2020, 8:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This function takes as input a GRanges object that contains GTF file contents
(e.g from the output of importGtf function).
Then extracts the coordinates of gene features
such as promoters, introns, exons, 5'/3' UTRs and
whole transcripts.
Usage
1 | getTxdbFeaturesFromGRanges(gffData)
|
Arguments
gffData |
A GRanges object imported by |
Value
A list of GRanges objects
Examples
1 2 | data(gff)
txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.