extractSequences: extractSequences
In RCAS: RNA Centric Annotation System
Description
Usage
Arguments
Value
Examples
Description
Given a GRanges object and a genome version (hg19, mm9, ce10 or dm3), this
function extracts the DNA sequences for all genomic regions found in an input
object.
Usage
1
extractSequences(queryRegions, genomeVersion)
Arguments
queryRegions
GRanges object containing coordinates of input query
regions imported by the importBed function
genomeVersion
A character string to denote the BS genome library
required to extract sequences. Available options are hg19, mm9, ce10 and
dm3.
Value
DNAStringSet object will be returned
Examples
1
2
3
data(queryRegions)
sequences <- extractSequences(queryRegions = queryRegions,
genomeVersion = 'hg19')
RCAS documentation built on Nov. 8, 2020, 8:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Given a GRanges object and a genome version (hg19, mm9, ce10 or dm3), this function extracts the DNA sequences for all genomic regions found in an input object.
Usage
1 | extractSequences(queryRegions, genomeVersion)
|
Arguments
queryRegions |
GRanges object containing coordinates of input query
regions imported by the |
genomeVersion |
A character string to denote the BS genome library required to extract sequences. Available options are hg19, mm9, ce10 and dm3. |
Value
DNAStringSet object will be returned
Examples
1 2 3 | data(queryRegions)
sequences <- extractSequences(queryRegions = queryRegions,
genomeVersion = 'hg19')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.