import_post_translational_interactions: Imports all post-translational interactions from OmniPath

In OmnipathR: OmniPath web service client

Description

Imports the dataset from all post-translational datasets of OmniPath.

Usage

import_post_translational_interactions(
  resources = NULL,
  organism = 9606,
  exclude = NULL,
  references_by_resource = TRUE,
  ...
)

Arguments

resources	interactions not reported in these databases are removed. See get_interaction_resources for more information.
organism	Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse
exclude	datasets to exclude
references_by_resource	if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.
...	optional additional arguments

Value

A dataframe containing post-translational interactions

See Also

get_interaction_resources, import_all_interactions

Examples

interactions <-
    import_post_translational_interactions(
        resources = c('BioGRID')
    )

OmnipathR documentation built on Nov. 8, 2020, 8:10 p.m.