import_omnipath_complexes: Imports protein complexes from OmniPath

In OmnipathR: OmniPath web service client

Description

Imports the complexes stored in Omnipath database from https://omnipathdb.org/complexes.

Usage

import_omnipath_complexes(cache_file = NULL, resources = NULL, ...)

import_Omnipath_complexes(...)

import_OmniPath_complexes(...)

Arguments

cache_file	path to an earlier data file
resources	complexes not reported in these databases are removed. See get_complexes_databases for more information.
...	Passed to import_omnipath_complexes.

Value

A dataframe containing information about complexes

See Also

get_complexes_databases

Examples

complexes = import_omnipath_complexes(
    resources = c('CORUM', 'hu.MAP')
)

OmnipathR documentation built on Nov. 8, 2020, 8:10 p.m.