validGRL: Helper Function to check valid GRangesList input

In ORFik: Open Reading Frames in Genomics

Description

Helper Function to check valid GRangesList input

Usage

validGRL(class, type = "grl", checkNULL = FALSE)

Arguments

class	as character vector the given class of supposed GRangesList object
type	a character vector, is it gtf, cds, 5', 3', for messages.
checkNULL	should NULL classes be checked and return indeces of these?

Value

either NULL or indices (checkNULL == TRUE)

See Also

Other validity: checkRFP(), checkRNA(), is.ORF(), is.gr_or_grl(), is.grl(), is.range(), validSeqlevels()

ORFik documentation built on March 27, 2021, 6 p.m.