bedToGR: Converts bed style data.frame to Granges

In ORFik: Open Reading Frames in Genomics

Description

For info on columns, see: https://www.ensembl.org/info/website/upload/bed.html

Usage

bedToGR(x, skip.name = TRUE)

Arguments

x	A data.frame from imported bed-file, to convert to GRanges
skip.name	default (TRUE), skip name column (column 4)

Value

a GRanges object from bed

See Also

Other utils: convertToOneBasedRanges(), export.bed12(), export.wiggle(), fimport(), findFa(), fread.bed(), optimizeReads(), readBam(), readWig()

ORFik documentation built on March 27, 2021, 6 p.m.