txNamesToGeneNames: Convert transcript names to gene names
In ORFik: Open Reading Frames in Genomics

Description Usage Arguments Value Examples

Works for ensembl, UCSC and other standard annotations.

1	txNamesToGeneNames(txNames, txdb)

`txNames`	character vector, the transcript names to convert. Can also be a named object with tx names (like a GRangesList), will then extract names.
`txdb`	the transcript database to use or gtf/gff path to it.

character vector of gene names

gtf <- system.file("extdata", "annotations.gtf", package = "ORFik")
txdb <- loadTxdb(gtf)
loadRegions(txdb, "cds") # using tx names
txNamesToGeneNames(cds, txdb)
# Identical to:
loadRegions(txdb, "cds", by = "gene")