import.bedo: Load GRanges object from .bedo
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Details
Value
View source: R/utils_imports.R
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with read lengths
.bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
1
import.bedo(path)
Arguments
path
a character, location on disc (full path)
Details
Positions are 1-based, not 0-based as .bed.
export with export.bedo
Value
GRanges object
ORFik documentation built on March 27, 2021, 6 p.m.
R Package Documentation
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Description Usage Arguments Details Value
View source: R/utils_imports.R
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with read lengths
.bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
1 | import.bedo(path)
|
Arguments
path |
a character, location on disc (full path) |
Details
Positions are 1-based, not 0-based as .bed. export with export.bedo
Value
GRanges object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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