hasHits: Hits from reads

In ORFik: Open Reading Frames in Genomics

Description

Finding GRanges groups that have overlap hits with reads Similar to

Usage

hasHits(grl, reads, keep.names = FALSE, overlaps = NULL)

Arguments

grl	a GRangesList or GRanges object
reads	a GRanges, GAlignment or GAlignmentPairs object
keep.names	logical (F), keep names or not
overlaps	default NULL, if not null must be countOverlaps(grl, reads), input if you have it already.

Value

a list of logicals, T == hit, F == no hit

ORFik documentation built on March 27, 2021, 6 p.m.