footprints.analysis: Pre shifting plot analysis
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
View source: R/shift_footprints_helpers.R
Description
For internal use only!
Usage
1
footprints.analysis(rw, heatmap, region = "start of CDS")
Arguments
rw
a data.table of position, score and fraction (read length)
of either TIS or TES (translation end site, around 3' UTR)
heatmap
a logical or character string, default FALSE.
If TRUE, will plot heatmap of
raw reads before p-shifting to console, to see if shifts given make sense.
You can also set a filepath to save the file there.
region
a character string, default "start of CDS"
Value
invisible(NULL)
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value
View source: R/shift_footprints_helpers.R
Description
For internal use only!
Usage
1 | footprints.analysis(rw, heatmap, region = "start of CDS")
|
Arguments
rw |
a data.table of position, score and fraction (read length) of either TIS or TES (translation end site, around 3' UTR) |
heatmap |
a logical or character string, default FALSE. If TRUE, will plot heatmap of raw reads before p-shifting to console, to see if shifts given make sense. You can also set a filepath to save the file there. |
region |
a character string, default "start of CDS" |
Value
invisible(NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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