findNewTSS: Finds max peaks per trancsript from reads in the cagefile
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
View source: R/cage_annotations.R
Description
Finds max peaks per trancsript from reads in the cagefile
Usage
1
findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)
Arguments
fiveUTRs
The 5' leader sequences as GRangesList
cageData
The CAGE as GRanges object
extension
The number of basses to extends transcripts upstream.
restrictUpstreamToTx
a logical (FALSE), if you want to restrict
leaders to not extend closer than 5 bases from closest upstream leader,
set this to TRUE.
Value
a Hits object
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value
View source: R/cage_annotations.R
Description
Finds max peaks per trancsript from reads in the cagefile
Usage
1 | findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)
|
Arguments
fiveUTRs |
The 5' leader sequences as GRangesList |
cageData |
The CAGE as GRanges object |
extension |
The number of basses to extends transcripts upstream. |
restrictUpstreamToTx |
a logical (FALSE), if you want to restrict leaders to not extend closer than 5 bases from closest upstream leader, set this to TRUE. |
Value
a Hits object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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