writeRnkFiles: Write rnk files containing gene projections
In MineICA: Analysis of an ICA decomposition obtained on genomics data

Description Usage Arguments Details Value Author(s)

Writes the gene projection values of each component in a '.rnk' file for GSEA.

1	writeRnkFiles(icaSet, abs = TRUE, path)

`icaSet`	An object of class `IcaSet`
`abs`	If TRUE (default) the absolute projection values are used.
`path`	The path that will contain the rnk files.

The .rnk format requires two columns, the first containing the gene IDs, the second containing the projection values. The genes are ordered by projection values. The files are named "index-of-component_abs.rnk" if abs=TRUE, or "index-of-component.rnk" if abs=FALSE.

NULL

Anne

MineICA documentation built on Nov. 8, 2020, 5:35 p.m.