Files in MOFA
Multi-Omics Factor Analysis (MOFA)
NEWS
README.md
NAMESPACE
.BBSoptions
DESCRIPTION
setup.py
LICENSE
R/loadModel.R
R/runMOFA.R
R/MOFA.R
R/AllGenerics.R
R/methods.R
R/makeExampleData.R
R/subset.R
R/plotData.R
R/plotWeights.R
R/AllClasses.R
R/clusterSamples.R
R/createMOFA.R
R/predict.R
R/QC.R
R/plotFactors.R
R/getMethods.R
R/calculateVarianceExplained.R
R/prepareMOFA.R
R/impute.R
R/zzz.R
R/compareModels.R
R/FSEA.R
R/setMethods.R
R/utils.R
R/PlotTrainStats.R
inst/doc/MOFA_example_scMT.Rmd
inst/doc/MOFA.R
inst/doc/MOFA_example_scMT.html
inst/doc/MOFA_example_simulated.Rmd
inst/doc/MOFA_example_simulated.R
inst/doc/MOFA.html
inst/doc/MOFA.Rmd
inst/doc/MOFA_example_scMT.R
inst/doc/MOFA_example_CLL.R
inst/doc/MOFA_example_simulated.html
inst/doc/MOFA_example_CLL.html
inst/doc/MOFA_example_CLL.Rmd
build/vignette.rds
vignettes/MOFA_example_scMT.Rmd
vignettes/MOFA_example_simulated.Rmd
vignettes/MOFA.Rmd
vignettes/MOFA_example_CLL.Rmd
images/scmt.png
images/logo.png
images/workflow.png
images/varExplained.png
man/viewNames.Rd
man/ModelOptions.Rd
man/predict.Rd
man/Dimensions.Rd
man/DataOptions.Rd
man/Expectations.Rd
man/regressCovariates.Rd
man/plotFactorBeeswarm.Rd
man/getTrainData.Rd
man/plotVarianceExplained.Rd
man/getDefaultModelOptions.Rd
man/plotFactorHist.Rd
man/plotEnrichmentHeatmap.Rd
man/InputData.Rd
man/plotEnrichment.Rd
man/plotFactorScatters.Rd
man/getDimensions.Rd
man/getWeights.Rd
man/plotDataOverview.Rd
man/trainCurveFactors.Rd
man/featureNames.Rd
man/plotEnrichmentDetailed.Rd
man/compareModels.Rd
man/plotWeights.Rd
man/compareFactors.Rd
man/FeatureIntercepts.Rd
man/subsetFactors.Rd
man/plotDataHeatmap.Rd
man/plotDataScatter.Rd
man/plotWeightsHeatmap.Rd
man/subsetSamples.Rd
man/ImputedData.Rd
man/getDefaultDataOptions.Rd
man/createMOFAobject.Rd
man/subsetViews.Rd
man/impute.Rd
man/sampleNames.Rd
man/runEnrichmentAnalysis.Rd
man/plotFactorScatter.Rd
man/loadModel.Rd
man/TrainData.Rd
man/MOFAmodel.Rd
man/runMOFA.Rd
man/calculateVarianceExplained.Rd
man/MOFA.Rd
man/Status.Rd
man/clusterSamples.Rd
man/getExpectations.Rd
man/factorNames.Rd
man/getELBO.Rd
man/getFactors.Rd
man/plotFactorCor.Rd
man/getCovariates.Rd
man/plotTopWeights.Rd
man/makeExampleData.Rd
man/selectModel.Rd
man/TrainOptions.Rd
man/plotEnrichmentBars.Rd
man/qualityControl.Rd
man/getDefaultTrainOptions.Rd
man/trainCurveELBO.Rd
man/getImputedData.Rd
man/TrainStats.Rd
man/prepareMOFA.Rd
mofapy/__init__.py
mofapy/core/multiview_nodes.py
mofapy/core/init_nodes.py
mofapy/core/nongaussian_nodes.py
mofapy/core/nodes.py
mofapy/core/__init__.py
mofapy/core/utils.py
mofapy/core/variational_nodes.py
mofapy/core/updates.py
mofapy/core/simulate.py
mofapy/core/distributions.py
mofapy/core/entry_point.py
mofapy/core/BayesNet.py
mofapy/core/mixed_nodes.py
mofapy/core/build_model.py
mofapy/run/__init__.py
mofapy/run/python_template.py
