Files in MAGeCKFlute

Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

README.md R/sgRankView.R R/enrich.HGT.R R/ConsistencyView.R R/MapRatesView.R R/SquareView.R R/ScatterView.R R/EnrichAnalyzer.R R/ReadsgRRA.R R/hclustView.R R/IdentBarVIew.R R/BatchRemove.R R/OmitCommonEssential.R R/enrich.ORT.R R/EnrichedGeneView.R R/ResembleDepmap.R R/RankView.R R/gsGetter.R R/ViolinView.R R/HeatmapView.R R/IncorporateDepmap.R R/KeggPathwayView.R R/DensityView.R R/TransGeneID.R R/NormalizeBeta.R R/EnrichSquare.R R/enrich.GSE.R R/EnrichAB.R R/EnrichedView.R R/BarView.R R/reexport.R R/EnrichedFilter.R R/VolcanoView.R R/ReadRRA.R R/MAView.R R/FluteMLE.R R/ReadBeta.R R/readGMT.R R/FluteRRA.R R/Selector.R vignettes/MAGeCKFlute_enrichment.Rmd vignettes/MAGeCKFlute.Rmd man/EnrichAnalyzer.Rd man/BatchRemove.Rd man/normalize.loess.Rd man/EnrichAB.Rd man/MAView.Rd man/ScatterView.Rd man/RankView.Rd man/TransGeneID.Rd man/HeatmapView.Rd man/getOrg.Rd man/arrangePathview.Rd man/EnrichedFilter.Rd man/reexports.Rd man/ReadsgRRA.Rd man/gsGetter.Rd man/MapRatesView.Rd man/getOrtAnn.Rd man/EnrichedView.Rd man/DensityDiffView.Rd man/EnrichedGeneView.Rd man/DensityView.Rd man/BarView.Rd man/ResembleDepmap.Rd man/ConsistencyView.Rd man/Selector.Rd man/FluteRRA.Rd man/ReadRRA.Rd man/IncorporateDepmap.Rd man/ReadGMT.Rd man/enrich.ORT.Rd man/retrieve_gs.Rd man/hclustView.Rd man/FluteMLE.Rd man/OmitCommonEssential.Rd man/ViolinView.Rd man/sgRankView.Rd man/getGeneAnn.Rd man/enrich.GSE.Rd man/VolcanoView.Rd man/EnrichSquare.Rd man/SquareView.Rd man/NormalizeBeta.Rd man/ReadBeta.Rd man/IdentBarView.Rd man/noEnrichPlot.Rd man/getCols.Rd man/enrich.HGT.Rd man/CutoffCalling.Rd inst/doc/MAGeCKFlute_enrichment.Rmd inst/doc/MAGeCKFlute.Rmd inst/doc/MAGeCKFlute_enrichment.R inst/doc/MAGeCKFlute.R