readRegionGRL: This function takes a region annotation object and reads in...
In LOLA: Locus overlap analysis for enrichment of genomic ranges

Description Usage Arguments Value Examples

This function takes a region annotation object and reads in the regions, returning a GRangesList object of the regions.

readRegionGRL(
  dbLocation,
  annoDT,
  refreshCaches = FALSE,
  useCache = TRUE,
  limit = NULL
)

`dbLocation`	folder of regiondB
`annoDT`	output of readRegionSetAnnotation().
`refreshCaches`	should I recreate the caches?
`useCache`	uses simpleCache to cache and load the results
`limit`	for testing purposes, limit the nmber of files read. NULL for no limit (default).

GRangesList object

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dbPath = system.file("extdata", "hg19", package="LOLA")
regionAnno = readRegionSetAnnotation(dbLocation=dbPath)
regionGRL = readRegionGRL(dbLocation= dbPath, regionAnno, useCache=FALSE)