readCollectionFiles: Given a database and a collection, this will create the...
In LOLA: Locus overlap analysis for enrichment of genomic ranges
Description
Usage
Arguments
Value
Examples
Description
Given a database and a collection, this will create the region annotation
data.table; either giving a generic table based on file names, or by
reading in the annotation data.
Usage
1
readCollectionFiles(dbLocation, collection, refreshSizes = FALSE)
Arguments
dbLocation
folder where your regionDB is stored.
collection
Collection folder to load
refreshSizes
should I recreate the sizes files
documenting how many regions (lines) are in each region set?
Value
A data.table annotating the regions in the collections.
Examples
1
2
dbPath = system.file("extdata", "hg19", package="LOLA")
regionAnno = readCollectionFiles(dbLocation=dbPath, "ucsc_example")
LOLA documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Value Examples
Description
Given a database and a collection, this will create the region annotation data.table; either giving a generic table based on file names, or by reading in the annotation data.
Usage
1 | readCollectionFiles(dbLocation, collection, refreshSizes = FALSE)
|
Arguments
dbLocation |
folder where your regionDB is stored. |
collection |
Collection folder to load |
refreshSizes |
should I recreate the sizes files documenting how many regions (lines) are in each region set? |
Value
A data.table annotating the regions in the collections.
Examples
1 2 | dbPath = system.file("extdata", "hg19", package="LOLA")
regionAnno = readCollectionFiles(dbLocation=dbPath, "ucsc_example")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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