API for LOLA
Locus overlap analysis for enrichment of genomic ranges
| Global functions | |
|---|---|
| LOLA | Man page |
| buildRestrictedUniverse | Man page Source code |
| checkUniverseAppropriateness | Man page Source code |
| cleanws | Man page Source code |
| countFileLines | Source code |
| countFileLinesBackup | Source code |
| countOverlapsAny | Source code |
| countOverlapsAnyRev | Man page Source code |
| countOverlapsRev | Source code |
| dtToGr | Source code |
| dtToGrInternal | Source code |
| enforceEdgeCharacter | Source code |
| enforceTrailingSlash | Source code |
| extractEnrichmentOverlaps | Man page Source code |
| getRegionFile | Man page Source code |
| getRegionSet | Man page Source code |
| lapplyAlias | Man page Source code |
| listRegionSets | Man page Source code |
| listToGRangesList | Man page Source code |
| loadRegionDB | Man page Source code |
| mergeRegionDBs | Man page Source code |
| nlist | Man page Source code |
| plotTopLOLAEnrichments | Man page Source code |
| readBed | Man page Source code |
| readCollection | Man page Source code |
| readCollectionAnnotation | Man page Source code |
| readCollectionFiles | Man page Source code |
| readRegionGRL | Man page Source code |
| readRegionSetAnnotation | Man page Source code |
| redefineUserSets | Man page Source code |
| replaceFileExtension | Man page Source code |
| runLOLA | Man page Source code |
| sampleGRL | Man page Source code |
| setLapplyAlias | Man page Source code |
| setSharedDataDir | Man page Source code |
| splitDataTable | Man page Source code |
| splitFileIntoCollection | Man page Source code |
| userSets | Man page |
| userUniverse | Man page |
| write.tsv | Man page Source code |
| writeCombinedEnrichment | Man page Source code |
| writeDataTableSplitByColumn | Man page Source code |
