get_fisher_info: Perform Fisher's Exact test for edges in pathway
In KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data

Description Usage Arguments Value Examples

Obtain a measure for strength and significance for the relationship (i.e. an edge) based on the concordance/discordance of UP-and-DOWN regulated genes shared by two different experimental gene-knockouts Intended for use within overlap_info

1	get_fisher_info(edges, method)

`edges`	The set of eges to be analyzed; Although the intended use is for LINCS data overlaps, the function should work with any typical data object as long as it has columns labeled ("UP", "DOWN", "UK1_DK2", "DK1_UK2") that contain integer values.
`method`	The method to correct/adjust p-values for multiple testing. For available methods, type 'p.adjust.methods' into command promt and press enter.

The input edge data.frame object with additional columns containing the results of the applied statistical test

ex.data <- data.frame("UP" = c(70,6), "DOWN" = c(8,20),
                    "UK1_DK2" = c(4,47), "DK1_UK2" = c(3, 28))

overlaps <- get_fisher_info(ex.data, method = "BH")